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Computational Methods for Application in Industry 4.0 (SpringerBriefs in Applied Sciences and Technology)
by J. Paulo Davim Angelos P. Markopoulos Nikolaos E. KarkalosThis book presents computational and statistical methods used by intelligent systems within the concept of Industry 4.0. The methods include among others evolution-based and swarm intelligence-based methods. Each method is explained in its fundamental aspects, while some notable bibliography is provided for further reading. This book describes each methods' principles and compares them. It is intended for researchers who are new in computational and statistical methods but also to experienced users.
Computational Methods for Biological Models (Studies in Computational Intelligence #1109)
by Harendra Singh Hemen DuttaThis book discusses computational methods related to biological models using mathematical tools and techniques. The book chapters concentrate on numerical and analytical techniques that provide a global solution for biological models while keeping long-term benefits in mind. The solutions are useful in closely understanding biological models, and the results will be very useful for mathematicians, engineers, doctors, scientists and researchers working on real-life biological models. This book provides significant and current knowledge of biological models related to real-life applications. The book covers both methods and applications.
Computational Methods for Corpus Annotation and Analysis
by Xiaofei LuIn the past few decades the use of increasingly large text corpora has grown rapidly in language and linguistics research. This was enabled by remarkable strides in natural language processing (NLP) technology, technology that enables computers to automatically and efficiently process, annotate and analyze large amounts of spoken and written text in linguistically and/or pragmatically meaningful ways. It has become more desirable than ever before for language and linguistics researchers who use corpora in their research to gain an adequate understanding of the relevant NLP technology to take full advantage of its capabilities. This volume provides language and linguistics researchers with an accessible introduction to the state-of-the-art NLP technology that facilitates automatic annotation and analysis of large text corpora at both shallow and deep linguistic levels. The book covers a wide range of computational tools for lexical, syntactic, semantic, pragmatic and discourse analysis, together with detailed instructions on how to obtain, install and use each tool in different operating systems and platforms. The book illustrates how NLP technology has been applied in recent corpus-based language studies and suggests effective ways to better integrate such technology in future corpus linguistics research. This book provides language and linguistics researchers with a valuable reference for corpus annotation and analysis.
Computational Methods for Deep Learning: Theoretic, Practice and Applications (Texts in Computer Science)
by Wei Qi YanIntegrating concepts from deep learning, machine learning, and artificial neural networks, this highly unique textbook presents content progressively from easy to more complex, orienting its content about knowledge transfer from the viewpoint of machine intelligence. It adopts the methodology from graphical theory, mathematical models, and algorithmic implementation, as well as covers datasets preparation, programming, results analysis and evaluations.Beginning with a grounding about artificial neural networks with neurons and the activation functions, the work then explains the mechanism of deep learning using advanced mathematics. In particular, it emphasizes how to use TensorFlow and the latest MATLAB deep-learning toolboxes for implementing deep learning algorithms.As a prerequisite, readers should have a solid understanding especially of mathematical analysis, linear algebra, numerical analysis, optimizations, differential geometry, manifold, and information theory, as well as basic algebra, functional analysis, and graphical models. This computational knowledge will assist in comprehending the subject matter not only of this text/reference, but also in relevant deep learning journal articles and conference papers.This textbook/guide is aimed at Computer Science research students and engineers, as well as scientists interested in deep learning for theoretic research and analysis. More generally, this book is also helpful for those researchers who are interested in machine intelligence, pattern analysis, natural language processing, and machine vision.Dr. Wei Qi Yan is an Associate Professor in the Department of Computer Science at Auckland University of Technology, New Zealand. His other publications include the Springer title, Visual Cryptography for Image Processing and Security.
Computational Methods for Deep Learning: Theory, Algorithms, and Implementations (Texts in Computer Science)
by Wei Qi YanThe first edition of this textbook was published in 2021. Over the past two years, we have invested in enhancing all aspects of deep learning methods to ensure the book is comprehensive and impeccable. Taking into account feedback from our readers and audience, the author has diligently updated this book. The second edition of this textbook presents control theory, transformer models, and graph neural networks (GNN) in deep learning. We have incorporated the latest algorithmic advances and large-scale deep learning models, such as GPTs, to align with the current research trends. Through the second edition, this book showcases how computational methods in deep learning serve as a dynamic driving force in this era of artificial intelligence (AI). This book is intended for research students, engineers, as well as computer scientists with interest in computational methods in deep learning. Furthermore, it is also well-suited for researchers exploring topics such as machine intelligence, robotic control, and related areas.
Computational Methods for Drug Repurposing (Methods in Molecular Biology #1903)
by Quentin VanhaelenThis detailed book explores techniques commonly used for research into drug repurposing, a well-known strategy to find alternative indications for drugs which have already undergone toxicology and pharma-kinetic studies but have failed later stages during the development, via computational methods. Thereby, it addresses the intense challenges of identifying the appropriate type of algorithm and relevant technical information for computational repurposing. Written for the highly successful Methods in Molecular Biology series, the authors of each chapter use their experience in the field to describe the implementation and successful use of a specific repurposing method thus providing lab-ready instruction. Authoritative and practical, Computational Methods for Drug Repurposing serves as an ideal guide to researchers interested in this vital area of drug development.
Computational Methods for Fluid Dynamics
by Joel H. Ferziger Milovan Perić Robert L. StreetThis book is a guide to numerical methods for solving fluid dynamics problems. The most widely used discretization and solution methods, which are also found in most commercial CFD-programs, are described in detail. Some advanced topics, like moving grids, simulation of turbulence, computation of free-surface flows, multigrid methods and parallel computing, are also covered. Since CFD is a very broad field, we provide fundamental methods and ideas, with some illustrative examples, upon which more advanced techniques are built. Numerical accuracy and estimation of errors are important aspects and are discussed in many examples. Computer codes that include many of the methods described in the book can be obtained online. This 4th edition includes major revision of all chapters; some new methods are described and references to more recent publications with new approaches are included. Former Chapter 7 on solution of the Navier-Stokes equations has been split into two Chapters to allow for a more detailed description of several variants of the Fractional Step Method and a comparison with SIMPLE-like approaches. In Chapters 7 to 13, most examples have been replaced or recomputed, and hints regarding practical applications are made. Several new sections have been added, to cover, e.g., immersed-boundary methods, overset grids methods, fluid-structure interaction and conjugate heat transfer.
Computational Methods for Nanoscale Applications: Particles, Plasmons and Waves (Nanostructure Science and Technology)
by Igor TsukermanPositioning itself at the common boundaries of several disciplines, this work provides new perspectives on modern nanoscale problems where fundamental science meets technology and computer modeling. In addition to well-known computational techniques such as finite-difference schemes and Ewald summation, the book presents a new finite-difference calculus of Flexible Local Approximation Methods (FLAME) that qualitatively improves the numerical accuracy in a variety of problems.
Computational Methods for Next Generation Sequencing Data Analysis
by Alexander Zelikovsky Ion MandoiuIntroduces readers to core algorithmic techniques for next-generation sequencing (NGS) data analysis and discusses a wide range of computational techniques and applications This book provides an in-depth survey of some of the recent developments in NGS and discusses mathematical and computational challenges in various application areas of NGS technologies. The 18 chapters featured in this book have been authored by bioinformatics experts and represent the latest work in leading labs actively contributing to the fast-growing field of NGS. The book is divided into four parts: Part I focuses on computing and experimental infrastructure for NGS analysis, including chapters on cloud computing, modular pipelines for metabolic pathway reconstruction, pooling strategies for massive viral sequencing, and high-fidelity sequencing protocols. Part II concentrates on analysis of DNA sequencing data, covering the classic scaffolding problem, detection of genomic variants, including insertions and deletions, and analysis of DNA methylation sequencing data. Part III is devoted to analysis of RNA-seq data. This part discusses algorithms and compares software tools for transcriptome assembly along with methods for detection of alternative splicing and tools for transcriptome quantification and differential expression analysis. Part IV explores computational tools for NGS applications in microbiomics, including a discussion on error correction of NGS reads from viral populations, methods for viral quasispecies reconstruction, and a survey of state-of-the-art methods and future trends in microbiome analysis. Computational Methods for Next Generation Sequencing Data Analysis: Reviews computational techniques such as new combinatorial optimization methods, data structures, high performance computing, machine learning, and inference algorithms Discusses the mathematical and computational challenges in NGS technologies Covers NGS error correction, de novo genome transcriptome assembly, variant detection from NGS reads, and more This text is a reference for biomedical professionals interested in expanding their knowledge of computational techniques for NGS data analysis. The book is also useful for graduate and post-graduate students in bioinformatics.
Computational Methods for Physicists: Compendium for Students (Graduate Texts in Physics)
by Simon Sirca Martin HorvatThis book helps advanced undergraduate, graduate and postdoctoral students in their daily work by offering them a compendium of numerical methods. The choice of methods pays significant attention to error estimates, stability and convergence issues as well as to the ways to optimize program execution speeds. Many examples are given throughout the chapters, and each chapter is followed by at least a handful of more comprehensive problems which may be dealt with, for example, on a weekly basis in a one- or two-semester course. In these end-of-chapter problems the physics background is pronounced, and the main text preceding them is intended as an introduction or as a later reference. Less stress is given to the explanation of individual algorithms. It is tried to induce in the reader an own independent thinking and a certain amount of scepticism and scrutiny instead of blindly following readily available commercial tools.
Computational Methods for Processing and Analysis of Biological Pathways (SpringerBriefs in Computer Science)
by Anastasios Bezerianos Andrei Dragomir Panos BalomenosThis work offers a guided walkthrough of one of the most promising research areas in modern life sciences, enabling a deeper understanding of involved concepts and methodologies via an interdisciplinary view, focusing on both well-established approaches and cutting-edge research. Highlighting what pathway analysis can offer to both the experimentalist and the modeler, the text opens with an introduction to a general methodology that outlines common workflows shared by several methods. This is followed by a review of pathway and sub-pathway based approaches for systems pharmacology. The work then presents an overview of pathway analysis methods developed to model the temporal aspects of drug- or disease-induced perturbations and extract relevant dynamic themes. The text concludes by discussing several state-of-the-art methods in pathway analysis, which address the important problem of identifying differentially expressed pathways and sub-pathways.
Computational Methods in Biometric Authentication: Statistical Methods for Performance Evaluation (Information Science and Statistics)
by Michael E. SchuckersBiometrics, the science of using physical traits to identify individuals, is playing an increasing role in our security-conscious society and across the globe. Biometric authentication, or bioauthentication, systems are being used to secure everything from amusement parks to bank accounts to military installations. Yet developments in this field have not been matched by an equivalent improvement in the statistical methods for evaluating these systems. Compensating for this need, this unique text/reference provides a basic statistical methodology for practitioners and testers of bioauthentication devices, supplying a set of rigorous statistical methods for evaluating biometric authentication systems. This framework of methods can be extended and generalized for a wide range of applications and tests. This is the first single resource on statistical methods for estimation and comparison of the performance of biometric authentication systems. The book focuses on six common performance metrics: for each metric, statistical methods are derived for a single system that incorporates confidence intervals, hypothesis tests, sample size calculations, power calculations and prediction intervals. These methods are also extended to allow for the statistical comparison and evaluation of multiple systems for both independent and paired data. Topics and features: * Provides a statistical methodology for the most common biometric performance metrics: failure to enroll (FTE), failure to acquire (FTA), false non-match rate (FNMR), false match rate (FMR), and receiver operating characteristic (ROC) curves * Presents methods for the comparison of two or more biometric performance metrics * Introduces a new bootstrap methodology for FMR and ROC curve estimation * Supplies more than 120 examples, using publicly available biometric data where possible * Discusses the addition of prediction intervals to the bioauthentication statistical toolset * Describes sample-size and power calculations for FTE, FTA, FNMR and FMR Researchers, managers and decisions makers needing to compare biometric systems across a variety of metrics will find within this reference an invaluable set of statistical tools. Written for an upper-level undergraduate or master's level audience with a quantitative background, readers are also expected to have an understanding of the topics in a typical undergraduate statistics course. Dr. Michael E. Schuckers is Associate Professor of Statistics at St. Lawrence University, Canton, NY, and a member of the Center for Identification Technology Research.
Computational Methods in Earthquake Engineering: Volume 2 (Computational Methods in Applied Sciences #30)
by Manolis Papadrakakis Michalis Fragiadakis Vagelis PlevrisThis book provides an insight on advanced methods and concepts for the design and analysis of structures against earthquake loading. This second volume is a collection of 28 chapters written by leading experts in the field of structural analysis and earthquake engineering. Emphasis is given on current state-of-the-art methods and concepts in computing methods and their application in engineering practice. The book content is suitable for both practicing engineers and academics, covering a wide variety of topics in an effort to assist the timely dissemination of research findings for the mitigation of seismic risk. Due to the devastating socioeconomic consequences of seismic events, the topic is of great scientific interest and is expected to be of valuable help to scientists and engineers. The chapters of this volume are extended versions of selected papers presented at the COMPDYN 2011 conference, held in the island of Corfu, Greece, under the auspices of the European Community on Computational Methods in Applied Sciences (ECCOMAS).
Computational Methods in Earthquake Engineering: Volume 2 (Computational Methods in Applied Sciences #21)
by Manolis Papadrakakis Nikos D. Lagaros Michalis FragiadakisThis book provides an insight in advanced methods and concepts for structural analysis and design against seismic loading. The book consists of 25 chapters dealing with a wide range of timely issues in contemporary Earthquake Engineering. In brief, the topics covered are: collapse assessment, record selection, effect of soil conditions, problems in seismic design, protection of monuments, earth dam structures and liquid containers, numerical methods, lifetime assessment, post-earthquake measures. A common ground of understanding is provided between the communities of Earth Sciences and Computational Mechanics towards mitigating seismic risk. The topic is of great social and scientific interest, due to the large number of scientists and practicing engineers currently working in the field and due to the great social and economic consequences of earthquakes.
Computational Methods in Economic Dynamics: Computational Methods In Economic Dynamics (Dynamic Modeling and Econometrics in Economics and Finance #13)
by Willi Semmler Herbert DawidThis volume is centered around the issue of market design and resulting market dynamics. The economic crisis of 2007-2009 has once again highlighted the importance of a proper design of market protocols and institutional details for economic dynamics and macroeconomics. Papers in this volume capture institutional details of particular markets, behavioral details of agents' decision making as well as spillovers between markets and effects to the macroeconomy. Computational methods are used to replicate and understand market dynamics emerging from interaction of heterogeneous agents, and to develop models that have predictive power for complex market dynamics. Finally treatments of overlapping generations models and differential games with heterogeneous actors are provided.
Computational Methods in Physics: Compendium for Students (Graduate Texts in Physics)
by Simon Širca Martin HorvatThis book is intended to help advanced undergraduate, graduate, and postdoctoral students in their daily work by offering them a compendium of numerical methods. The choice of methods pays significant attention to error estimates, stability and convergence issues, as well as optimization of program execution speeds. Numerous examples are given throughout the chapters, followed by comprehensive end-of-chapter problems with a more pronounced physics background, while less stress is given to the explanation of individual algorithms. The readers are encouraged to develop a certain amount of skepticism and scrutiny instead of blindly following readily available commercial tools. The second edition has been enriched by a chapter on inverse problems dealing with the solution of integral equations, inverse Sturm-Liouville problems, as well as retrospective and recovery problems for partial differential equations. The revised text now includes an introduction to sparse matrix methods, the solution of matrix equations, and pseudospectra of matrices; it discusses the sparse Fourier, non-uniform Fourier and discrete wavelet transformations, the basics of non-linear regression and the Kolmogorov-Smirnov test; it demonstrates the key concepts in solving stiff differential equations and the asymptotics of Sturm-Liouville eigenvalues and eigenfunctions. Among other updates, it also presents the techniques of state-space reconstruction, methods to calculate the matrix exponential, generate random permutations and compute stable derivatives.
Computational Methods in Stochastic Dynamics: Volume 2 (Computational Methods in Applied Sciences #22)
by Manolis Papadrakakis George Stefanou Vissarion PapadopoulosAt the dawn of the 21st century, computational stochastic dynamics is an emerging research frontier. This book focuses on advanced computational methods and software tools which can highly assist in tackling complex problems in stochastic dynamic/seismic analysis and design of structures. The book is primarily intended for researchers and post-graduate students in the fields of computational mechanics and stochastic structural dynamics. Nevertheless, practice engineers as well could benefit from it as most code provisions tend to incorporate probabilistic concepts in the analysis and design of structures. The book addresses mathematical and numerical issues in stochastic structural dynamics and connects them to real-world applications. It consists of 16 chapters dealing with recent advances in a wide range of related topics (dynamic response variability and reliability of stochastic systems, risk assessment, stochastic simulation of earthquake ground motions, efficient solvers for the analysis of stochastic systems, dynamic stability, stochastic modelling of heterogeneous materials). Numerical examples demonstrating the significance of the proposed methods are presented in each chapter.
Computational Methods in Stochastic Dynamics: Volume 2 (Computational Methods in Applied Sciences #26)
by Manolis Papadrakakis George Stefanou Vissarion PapadopoulosThe considerable influence of inherent uncertainties on structural behavior has led the engineering community to recognize the importance of a stochastic approach to structural problems. Issues related to uncertainty quantification and its influence on the reliability of the computational models are continuously gaining in significance. In particular, the problems of dynamic response analysis and reliability assessment of structures with uncertain system and excitation parameters have been the subject of continuous research over the last two decades as a result of the increasing availability of powerful computing resources and technology. This book is a follow up of a previous book with the same subject (ISBN 978-90-481-9986-0) and focuses on advanced computational methods and software tools which can highly assist in tackling complex problems in stochastic dynamic/seismic analysis and design of structures. The selected chapters are authored by some of the most active scholars in their respective areas and represent some of the most recent developments in this field. The book consists of 21 chapters which can be grouped into several thematic topics including dynamic analysis of stochastic systems, reliability-based design, structural control and health monitoring, model updating, system identification, wave propagation in random media, seismic fragility analysis and damage assessment. This edited book is primarily intended for researchers and post-graduate students who are familiar with the fundamentals and wish to study or to advance the state of the art on a particular topic in the field of computational stochastic structural dynamics. Nevertheless, practicing engineers could benefit as well from it as most code provisions tend to incorporate probabilistic concepts in the analysis and design of structures.
Computational Methods in Systems Biology: 18th International Conference, CMSB 2020, Konstanz, Germany, September 23–25, 2020, Proceedings (Lecture Notes in Computer Science #12314)
by Alessandro Abate Tatjana Petrov Verena WolfThis book constitutes the refereed proceedings of the 18th International Conference on Computational Methods in Systems Biology, CMSB 2020, held in Konstanz, Germany, in September 2020.*The 17 full papers and 5 tool papers were carefully reviewed and selected from 30 submissions. In addition 3 abstracts of invited talks and 2 tutorials have been included in this volume. Topics of interest include formalisms for modeling biological processes; models and their biological applications; frameworks for model verification, validation, analysis, and simulation of biological systems; high-performance computational systems biology and parallel implementations; model inference from experimental data; model integration from biological databases; multi-scale modeling and analysis methods; computational approaches for synthetic biology; and case studies in systems and synthetic biology. * The conference was held virtually due to the COVID-19 pandemic.
Computational Methods in Systems Biology: 17th International Conference, CMSB 2019, Trieste, Italy, September 18–20, 2019, Proceedings (Lecture Notes in Computer Science #11773)
by Luca Bortolussi Guido SanguinettiThis book constitutes the refereed proceedings of the 17th International Conference on Computational Methods in Systems Biology, CMSB 2019, held in Trieste, Italy, in September 2019.The 14 full papers, 7 tool papers and 11 posters were carefully reviewed and selected from 53 submissions. Topics of interest include formalisms for modeling biological processes; models and their biological applications; frameworks for model verification, validation, analysis, and simulation of biological systems; high-performance computational systems biology and parallel implementations; model inference from experimental data; model integration from biological databases; multi-scale modeling and analysis methods; computational approaches for synthetic biology; and case studies in systems and synthetic biology.
Computational Methods in Systems Biology: 19th International Conference, CMSB 2021, Bordeaux, France, September 22–24, 2021, Proceedings (Lecture Notes in Computer Science #12881)
by Eugenio Cinquemani Loïc PaulevéThis book constitutes the refereed proceedings of the 19th International Conference on Computational Methods in Systems Biology, CMSB 2021, held in Bordeaux, France, September 22–24, 2021.*The 13 full papers and 5 tool papers were carefully reviewed and selected from 32 submissions. The topics of interest include biological process modelling; biological system model verification, validation, analysis, and simulation; high-performance computational systems biology; model inference from experimental data; multi-scale modeling and analysis methods; computational approaches for synthetic biology; machine learning and data-driven approaches; microbial ecology modelling and analysis; methods and protocols for populations and their variability; models, applications, and case studies in systems and synthetic biology. The chapters "Microbial Community Decision Making Models in Batch", "Population design for synthetic gene circuits", "BioFVM-X: An MPI+OpenMP 3-D Simulator for Biological Systems" are published open access under a CC BY license (Creative Commons Attribution 4.0 International License). * The conference was held in a hybrid mode due to the COVID-19 pandemic.
Computational Methods in Systems Biology: 16th International Conference, CMSB 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings (Lecture Notes in Computer Science #11095)
by Milan Češka David ŠafránekThis book constitutes the refereed proceedings of the 16th International Conference on Computational Methods in Systems Biology, CMSB 2018, held in BRNO, Czech Republic, in September 2018. The 15 full and 7 short papers presented together with 5 invited talks were carefully reviewed and selected from 46 submissions. Topics of interest include formalisms for modeling biological processes; models and their biological applications; frameworks for model verification, validation, analysis, and simulation of biological systems; high-performance computational systems biology; parameter and model inference from experimental data; automated parameter and model synthesis; model integration and biological databases; multi-scale modeling and analysis methods; design, analysis, and verification methods for synthetic biology; methods for biomolecular computing and engineered molecular devices.Chapters 3, 9 and 10 are available open access under a Creative Commons Attribution 4.0 International License via link.springer.com.
Computational Methods in Systems Biology: 15th International Conference, CMSB 2017, Darmstadt, Germany, September 27–29, 2017, Proceedings (Lecture Notes in Computer Science #10545)
by Heinz Koeppl Jérôme FeretThis book constitutes the refereed proceedings of the 15th International Conference on Computational Methods in Systems Biology, CMSB 2017, held in Darmstadt, Germany, in September 2017. The 15 full papers, 4 tool papers and 4 posters presented together with 1 invited talk were carefully reviewed and selected from 41 regular paper submissions. Topics of interest include formalisms for modeling biological processes; models and their biological applications; frameworks for model verication, validation, analysis, and simulation of biological systems; high-performance computational systems biology and parallel implementations; model inference from experimental data; model integration from biological databases; multi-scale modeling and analysis methods; and computational approaches for synthetic biology.
Computational Methods in Systems Biology: 21st International Conference, CMSB 2023, Luxembourg City, Luxembourg, September 13–15, 2023, Proceedings (Lecture Notes in Computer Science #14137)
by Jun Pang Joachim NiehrenThis book constitutes the refereed proceedings of the 21st International Conference on Computational Methods in Systems Biology, CMSB 2023, held in Luxembourg City, Luxembourg, during September 13–15, 2023. The 14 full papers and 3 tool papers presented in this book were carefully reviewed and selected from 28 submissions. CMSB focuses on modeling, simulation, analysis, design and control of biological systems and covers the broad field of computational methods and tools in systems and synthetic biology and their applications.
Computational Methods in Systems Biology: 20th International Conference, CMSB 2022, Bucharest, Romania, September 14–16, 2022, Proceedings (Lecture Notes in Computer Science #13447)
by Ion Petre Andrei PăunThis book constitutes the refereed proceedings of the 20th International Conference on Computational Methods in Systems Biology, CMSB 2022, held in Bucharest, Romania, in September 2022.The 13 full papers and 4 tool papers were carefully reviewed and selected from 43 submissions. CMSB focuses on modeling, simulation, analysis, design and control of biological systems. The papers are arranged thematically as follows: Chemical reaction networks; Boolean networks; continuous and hybrid models; machine learning; software.