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Molecular Plant Taxonomy
by Pascale BessePlant taxonomy is an ancient discipline facing new challenges with the current availability of a vast array of molecular approaches which allow reliable genealogy-based classifications. Although the primary focus of plant taxonomy is on the delimitation of species, molecular approaches also provide a better understanding of evolutionary processes, a particularly important issue for some taxonomic complex groups. Molecular Plant Taxonomy: Methods and Protocolsdescribes laboratory protocols based on the use of nucleic acids and chromosomes for plant taxonomy, as well as guidelines for phylogenetic analysis of molecular data. Experts in the field also contribute review and application chapters that will encourage the reader to develop an integrative taxonomy approach, combining nucleic acid and cytogenetic data together with other crucial information (taxonomy, morphology, anatomy, ecology, reproductive biology, biogeography, paleobotany), which will help not only to best circumvent species delimitation but also to resolve the evolutionary processes in play. Written in the successfulMethods in Molecular Biologyseries format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible protocols, and notes on troubleshooting and avoiding known pitfalls. Authoritative and easily accessible, Molecular Plant Taxonomy: Methods and Protocolsseeks to provide conceptual as well as technical guidelines to plant taxonomists and geneticists.
Molecular Plant Taxonomy: Methods and Protocols (Methods in Molecular Biology #2222)
by Pascale BesseThis fully updated edition explores conceptual as well as technical guidelines for plant taxonomists and geneticists, such as the increasing use of next-generation sequencing (NGS) technologies for numerous applications in plant taxonomy. The volume provides molecular approaches to be used within an “integrative taxonomy” framework, combining a range of nucleic acid and cytogenetic data together with other crucial information (taxonomy, morphology, anatomy, ecology, reproductive biology, biogeography, paleobotany, etc.), which will help not only to best circumvent species delimitation but also to resolve the evolutionary processes in play. Written for the highly successful Methods in Molecular Biology series, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and up-to-date, Molecular Plant Taxonomy: Methods and Protocols, Second Edition is an ideal guide for researchers seeking a better understanding of evolutionary processes, at species and population level, through molecular techniques.
Molecular Plant Virology: Volume I: Virus Structure and Assembly and Nucleic Acid-Protein Interactions
by DavisIn calling this series Molecular Plant Virology, I had in mind aspects of plant virology of interest to biochemists, molecular geneticists, biophysicists, genetic engineers, or, collectively,molecular biologists. At the same time, the intention was to provide up-to-date reviews, by expert contributors, on current research topics in plant virology of interest and referential use to virologists and plant biologists. The selected topics are pitched mainly at a research level, but with sufficient introduction and cross-referencing to enable graduate students to enter this fascinating field and, hopefully, not get lost.
Molecular Plant Virology: Volume II: Replication and Gene Expression
by DavisIn calling this series Molecular Plant Virology, I had in mind aspects of plant virology of interest to biochemists, molecular geneticists, biophysicists, genetic engineers, or, collectively,molecular biologists. At the same time, the intention was to provide up-to-date reviews, by expert contributors, on current research topics in plant virology of interest and referential use to virologists and plant biologists. The selected topics are pitched mainly at a research level, but with sufficient introduction and cross-referencing to enable graduate students to enter this fascinating field and, hopefully, not get lost.
Molecular Profiling
by Virginia Espina Lance A. LiottaThe next revolution in molecular medicine is the application of molecular profiling to individualized patient therapy. Molecular profiling technology has advanced dramatically, particularly in the field of cancer tissue biomarkers. It is now possible to gather complex genomic and proteomic information from a routine clinical needle biopsy or surgical specimen. In Molecular Profiling : Methods and Protocols, expert researchers in the field focus on the entire process from discovery to commercialization, with practical guides that are not limited to experimental methods. Written in the highly successful Methods in Molecular BiologyTM series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, as well as essays and guidelines for grants, patents, and commercialization of products related to molecular profiling. Authoritative and practical, Molecular Profiling: Methods and Protocols seeks to aid scientists in understanding the latest advancements in genomics, proteomics, imagining, and bioinformatics.
Molecular Profiling
by Virginia EspinaThe next revolution in molecular medicine is the application of molecular profiling to individualized patient therapy. Molecular profiling technology has advanced dramatically, particularly in the field of cancer tissue biomarkers. It is now possible to gather complex genomic and proteomic information from a routine clinical needle biopsy or surgical specimen. In Molecular Profiling : Methods and Protocols, expert researchers in the field focus on the entire process from discovery to commercialization, with practical guides that are not limited to experimental methods. Written in the highly successful Methods in Molecular Biology(tm) series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, as well as essays and guidelines for grants, patents, and commercialization of products related to molecular profiling. Authoritative and practical, Molecular Profiling: Methods and Protocols seeks to aid scientists in understanding the latest advancements in genomics, proteomics, imagining, and bioinformatics.
Molecular Properties via Induced Current Densities (Springer Theses)
by Francesco Ferdinando SummaThis book outlines past and new developments in molecular response theory in terms of static and dynamic-induced current densities and showcases an important step forward in the field of molecular density functions and their topological analysis. The book begins with a general perspective on topics such as classical Hamiltonian, quantum mechanical Hamiltonian, and topological analysis of the electron charge density, followed by an in-depth overview of time-dependent and -independent perturbations, and applications. In this book, the author presents a completely new approach that allows the interpretation of electric and magnetic properties through origin-independent density functions. Readers will also find examples of how the new origin-independent density functions are useful for rationalizing the chemical behavior of molecules interacting with impinging radiation. The concepts contained within the book are the basis for a deeper understanding of Nuclear magnetic resonance (NMR) and Electron paramagnetic resonance (EPR) spectroscopies, as well as the mechanisms that give rise to electric polarization and optical activity in chiral systems. A basic knowledge of quantum mechanics and ab initio electronic structure calculation methods such as Hartree-Fock and Density Functional Theory is required. Given its breadth, the book provides an important contribution to the field of Quantum Chemical Topology and appeals to students and researchers interested in learning more about the relationship between electrical and magnetic properties, density functions derivable from them and experimental observables.
Molecular Quantum Dynamics
by Fabien GattiThis book focuses on current applications of molecular quantum dynamics. Examples from all main subjects in the field, presented by the internationally renowned experts, illustrate the importance of the domain. Recent success in helping to understand experimental observations in fields like heterogeneous catalysis, photochemistry, reactive scattering, optical spectroscopy, or femto- and attosecond chemistry and spectroscopy underline that nuclear quantum mechanical effects affect many areas of chemical and physical research. In contrast to standard quantum chemistry calculations, where the nuclei are treated classically, molecular quantum dynamics can cover quantum mechanical effects in their motion. Many examples, ranging from fundamental to applied problems, are known today that are impacted by nuclear quantum mechanical effects, including phenomena like tunneling, zero point energy effects, or non-adiabatic transitions. Being important to correctly understand many observations in chemical, organic and biological systems, or for the understanding of molecular spectroscopy, the range of applications covered in this book comprises broad areas of science: from astrophysics and the physics and chemistry of the atmosphere, over elementary processes in chemistry, to biological processes (such as the first steps of photosynthesis or vision). Nevertheless, many researchers refrain from entering this domain. The book "Molecular Quantum Dynamics" offers them an accessible introduction. Although the calculation of large systems still presents a challenge - despite the considerable power of modern computers - new strategies have been developed to extend the studies to systems of increasing size. Such strategies are presented after a brief overview of the historical background. Strong emphasis is put on an educational presentation of the fundamental concepts, so that the reader can inform himself about the most important concepts, like eigenstates, wave packets, quantum mechanical resonances, entanglement, etc. The chosen examples highlight that high-level experiments and theory need to work closely together. This book thus is a must-read both for researchers working experimentally or theoretically in the concerned fields, and generally for anyone interested in the exciting world of molecular quantum dynamics.
Molecular Quantum Electrodynamics
by T. Thirunamachandran D. P. CraigThis systematic introduction to quantum electrodynamics focuses on the interaction of radiation with outer electrons and nuclei of atoms and molecules, answering the long-standing need of chemists and physicists for a comprehensive text on this highly specialized subject.Geared toward postgraduate students in the chemical sciences who require an understanding of quantum electrodynamics as applied to the interpretation of optical experiments on atoms and molecules, the text offers a detailed explanation of the quantum theory of electromagnetic radiation and its interaction with matter. It features formal derivations of the quantized field matrix elements for an amazing number of laser-molecule interaction effects: one- and two-photon absorption and emission; Rayleigh and Raman scattering; dispersion forces in a radiation field; radiation-induced chiral discrimination; both linear and nonlinear optical processes such as Coherent Anti-Stokes Raman Scattering (CARS) and laser-induced optical rotation; self-energy; and the Lamb shift.Virtually a one-volume encyclopedia, this self-contained book starts with first principles, making it useful both for students and experts in the field. Molecular physicists, quantum chemists, chemical physicists, and theoretical chemists will find essential calculation techniques explained with the greatest clarity.
Molecular Rearrangements in Organic Synthesis
by Christian M. RojasDesigned for practitioners of organic synthesis, this book helps chemists understand and take advantage of rearrangement reactions to enhance the synthesis of useful chemical compounds. Provides ready access to the genesis, mechanisms, and synthetic utility of rearrangement reactions Emphasizes strategic synthetic planning and implementation Covers 20 different rearrangement reactions Includes applications for synthesizing compounds useful as natural products, medicinal compounds, functional materials, and physical organic chemistry
Molecular Recognition of DNA Double Helix: Gene Regulation And Photochemistry Of Bru Substituted Dna (Springer Theses)
by Abhijit SahaIn this book, the molecular recognition of DNA using small molecules is discussed, with a study of the photochemistry of BrU-labeled DNA. The purposes of the study were to develop small molecules for regenerative medicine, to develop a method to detect the recognition site of small molecules, and to detect the most important biological phenomena using the photochemistry of BrU-labeled DNA. The study began with the design and development of small molecules that can induce pluripotency genes. To deal with the important issue of cell permeability of the original compound, a new analogue of the original with improved gene expression was designed and synthesized. Using the photochemistry of BrU-labeled DNA, crucial biological phenomena such as cooperativity between transcription factors were detected. For the first time, the cooperativity was examined by excess electron transfer assay. DNA was also studied very carefully in order to understand the mechanism of the double-strand break in the UVA micro-irradiation technique. The mechanism of the double strand remained untouched. Nevertheless, the double-strand break mechanism was clearly demonstrated by Hoechst dye, as shown in this book.
Molecular Regulation of Arousal States
by Ralph LydicArousal states are processes that include waking, deep sleep, and the dreaming phase of sleep (REM). Molecular Regulation of Arousal States explores the cellular and molecular mechanisms by which sleep and wakefulness are regulated and seeks explanations for the generation of arousal states. It presents step-by-step research protocols that allow investigators to apply the techniques described to a wide range of physiological and behavioral research problems, such as sleep neurobiology and state-dependent disruption of cardiopulmonary control. For the first time, a single source integrates cellular and molecular research techniques with studies of arousal, opening the door to exciting new research methodologies.
Molecular Response Functions for the Polarizable Continuum Model
by Roberto CammiThis Brief presents the main aspects of the response functions theory (RFT) for molecular solutes described within the framework of the Polarizable Continuum Model (PCM). PCM is a solvation model for a Quantum Mechanical molecular system in which the solvent is represented as a continuum distribution of matter. Particular attention is devoted to the description of the basic features of the PCM model, and to the problems characterizing the study of the response function theory for molecules in solution with respect to the analogous theory on isolated molecules.
Molecular Robotics: An Introduction
by Satoshi MurataIn this book, researchers at the forefront of the field explain the minimum necessary background knowledge and introduce important topics in molecular robotics in an easy-to-understand manner.Molecular robotics is related to many fields, such as systems engineering, control engineering, computer science, biochemistry, biophysics, polymer chemistry, nucleic acid chemistry, molecular biology, and ethics. The whole picture of molecular robotics can be grasped only by looking at these fields from a bird's-eye view. This book has been planned in the belief that such a book is essential for students and those new to the field to understand the ongoing expansion of molecular robotics.The book consists of eight chapters: introduction, design theory of molecular robots, systemization technology, molecular nanotechnology, molecular actuators, molecular materials, medical applications, and social acceptance. In each chapter, the reader can get a general idea of the theory, underlying technology, medical applications, and social issues, and can also understand what is currently being done on the research front. In addition, there are many parts that introduce topics related to molecular robotics.
Molecular Science of Fluctuations Toward Biological Functions
by Masahide Terazima Mikio Kataoka Ryuichi Ueoka Yuko OkamotoIn this monograph, the importance of fluctuations forbiological reactions is discussed from various points of view. Understandingthe biological reactions at the molecular level is one of the major targets inmany scientific fields, including not only basic biology but also physics,physical chemistry, and medical science. One of the key factors in the processis "fluctuation". Thermal energy causes biological molecules to be in constantfluctuation even while they are carrying out their biological functions. How dobiological systems overcome the thermal fluctuations to realize thephysiologically relevant reactions? Scientists in a number of fields--physics,chemistry, pharmacology, medicine, and others--have contributed chapters thatelucidate the nature of the fluctuations and the relationship betweenfluctuations and biological functions. The fluctuations discussed in this volumeare detected by the transient grating method, nuclear magnetic resonance, X-raydiffraction and scattering, and computer simulation, among other methods. Thebook presents various results of the studies of fluctuations in biologicalprocesses that were obtained with these methods by the leading scientists intheir fields.
Molecular Simulation Studies on Thermophysical Properties
by Gabriele RaabeThis book discusses the fundamentals of molecular simulation, starting with the basics of statistical mechanics and providing introductions to Monte Carlo and molecular dynamics simulation techniques. It also offers an overview of force-field models for molecular simulations and their parameterization, with a discussion of specific aspects. The book then summarizes the available know-how for analyzing molecular simulation outputs to derive information on thermophysical and structural properties. Both the force-field modeling and the analysis of simulation outputs are illustrated by various examples. Simulation studies on recently introduced HFO compounds as working fluids for different technical applications demonstrate the value of molecular simulations in providing predictions for poorly understood compounds and gaining a molecular-level understanding of their properties. This book will prove a valuable resource to researchers and students alike.
Molecular Simulation on Cement-Based Materials: From Theory to Application
by Dongshuai HouThis book presents a number of studies on the molecular dynamics of cement-based materials. It introduces a practical molecular model of cement-hydrate, delineates the relationship between molecular structure and nanoscale properties, reveals the transport mechanism of cement-hydrate, and provides useful methods for material design. Based on the molecular model presented here, the book subsequently sheds light on nanotechnology applications in the design of construction and building materials. As such, it offers a valuable asset for researchers, scientists, and engineers in the field of construction and building materials.
Molecular Soft-Interface Science: Principles, Molecular Design, Characterization and Application
by Tetsuji Yamaoka Mizuo Maeda Atsushi Takahara Hiromi Kitano Yoshiko MiuraThis book offers a comprehensive treatment of the molecular design, characterization, and physical chemistry of soft interfaces. At the same time, the book aims to encourage the fabrication of functional materials including biomaterials. During the past few decades there has been steady growth in soft-interface science, and that growth has been especially rapid in the twenty-first century. The field is interdisciplinary because it involves chemistry, polymer science, materials science, physical chemistry, and biology. Based on the increasing interdisciplinary nature of undergraduate and graduate programs, the primary goal of this present work is to serve as a comprehensive resource for senior-level undergraduates and for graduate students, particularly in polymer chemistry, materials science, bioconjugate chemistry, bioengineering, and biomaterials. Additionally, with the growing interest in the fabrication of functional soft materials, this book provides essential fundamental information for researchers not only in academia but also in industry.
Molecular Spectroscopy of Dynamically Compressed Materials (Shock Wave and High Pressure Phenomena)
by David S. MooreThis book offers historical and state-of-the-art molecular spectroscopy methods and applications in dynamic compression science, aimed at the upcoming generation in physical sciences involved in studies of materials at extremes. It begins with addressing the motivation for probing shock compressed molecular materials with spectroscopy and then reviews historical developments and the basics of the various spectroscopic methods that have been utilized. Introductory chapters are devoted to fundamentals of molecular spectroscopy, overviews of dynamic compression technologies, and diagnostics used to quantify the shock compression state during spectroscopy experiments. Subsequent chapters describe all the molecular spectroscopic methods used in shock compression research to date, including theory, experimental details for application to shocked materials, and difficulties that can be encountered. Each of these chapters also includes a section comparing static compression results. The last chapter offers an outlook for the future, which leads the next-generation readers to tackling persistent problems.
Molecular Spectroscopy, Second Edition
by Jeanne L. MchaleThis textbook offers an introduction to the foundations of spectroscopic methods and provides a bridge between basic concepts and experimental applications in fields as diverse as materials science, biology, solar energy conversion, and environmental science. The author emphasizes the use of time-dependent theory to link the spectral response in the frequency domain to the behavior of molecules in the time domain, strengthened by two brand new chapters on nonlinear optical spectroscopy and time-resolved spectroscopy. Theoretical underpinnings are presented to the extent necessary for readers to understand how to apply spectroscopic tools to their own interests.
Molecular Spectroscopy—Experiment and Theory: From Molecules to Functional Materials (Challenges and Advances in Computational Chemistry and Physics #26)
by Andrzej Koleżyński Magdalena KrólThis book reviews various aspects of molecular spectroscopy and its application in materials science, chemistry, physics, medicine, the arts and the earth sciences. Written by an international group of recognized experts, it examines how complementary applications of diverse spectroscopic methods can be used to study the structure and properties of different materials. The chapters cover the whole spectrum of topics related to theoretical and computational methods, as well as the practical application of spectroscopic techniques to study the structure and dynamics of molecular systems, solid-state crystalline and amorphous materials, surfaces and interfaces, and biological systems. As such, the book offers an invaluable resource for all researchers and postgraduate students interested in the latest developments in the theory, experimentation, measurement and application of various advanced spectroscopic methods for the study of materials.
Molecular Storms: The Physics of Stars, Cells and the Origin of Life
by Liam Graham“Following in the footsteps of Stephen Hawking's ‘A brief history of time’ and Simon Singh's ‘Fermat’s Last Theorem’ this exceptionally accessible book will you leave marveling at the wonders of the world and, if you didn't listen to your science teachers, wishing you had. Graham writes with the mind of a physicist and the soul of a poet.” Nicki Hayes, CCO, The Communications Practice, author of First Aid for Feelings. “Only a few writers have managed to turn the highly technical jargon of science into language accessible for interested lay readers. Isaac Asimov showed us how it could be done, and Carl Zimmer and Brian Greene are continuing today. In Molecular Storms, his first book, Liam Graham has shown that he has the essential quality required to join this group, a love of first learning then explaining how the universe works." David Deamer, Professor of Biomolecular Engineering, University of California, Santa Cruz, author of Assembling Life.Why is the universe the way it is? Wherever we look, we find ordered structures: from stars to planets to living cells. This book shows that the same driving force is behind structure everywhere: the incessant random motion of the components of matter. Physicists call it thermal noise. Let’s call it the molecular storm.This storm drives the fusion reactions that make stars shine. It drives whirlpools and currents in atmospheres and oceans. It spins and distorts molecules until they are in the right orientation to react and form new substances. In living cells, it drives proteins to fold and molecules to self-assemble. It is behind every detail of the astonishing molecular machines that control cellular processes.Using cutting-edge research, “Molecular Storms” takes us on a dazzling journey from the early universe to the interior of the smallest living things. There, in a nanoscale world of biological devices, it explains the physics behind the chemical system which we call Life.Whether you're someone with a general interest in science or a student looking to add context to your studies, this book is for you. "Molecular Storms" is an accessible and captivating read that will deepen your appreciation of the power of science to explain the world.
Molecular Stress Physiology of Plants
by Anath Bandhu Das Gyana Ranjan RoutCrop growth and production is dependent on various climatic factors. Both abiotic and biotic stresses have become an integral part of plant growth and development. There are several factors involved in plant stress mechanism. The information in the area of plant growth and molecular mechanism against abiotic and biotic stresses is scattered. The up-to-date information with cited references is provided in this book in an organized way. More emphasis has been given to elaborate the injury and tolerance mechanisms and growth behavior in plants against abiotic and biotic stresses. This book also deals with abiotic and biotic stress tolerance in plants, molecular mechanism of stress resistance of photosynthetic machinery, stress tolerance in plants: special reference to salt stress - a biochemical and physiological adaptation of some Indian halophytes, PSII fluorescence techniques for measurement of drought and high temperature stress signal in crop plants: protocols and applications, salicylic acid: role in plant physiology & stress tolerance, salinity induced genes and molecular basis of salt tolerance mechanism in mangroves, reproductive stage abiotic stress tolerance in cereals, calorimetry and Raman spectrometry to study response of plant to biotic and abiotic stresses, molecular physiology of osmotic stress in plants and mechanisms, functions and toxicity of heavy metals stress in plants, submergence stress tolerance in plants and adoptive mechanism, Brassinosteroid modulated stress responses under temperature stress, stress tolerant in plants: a proteomics approach, Marker-assisted breeding for stress resistance in crop plants, DNA methylation associated epigenetic changes in stress tolerance of plants and role of calcium-mediated CBL-CIPK network in plant mineral nutrition & abiotic stress. Each chapter has been laid out with introduction, up-to-date literature, possible stress mechanism, and applications. Under abiotic stress, plant produces a large quantity of free radicals, which have been elaborated. We hope that this book will be of greater use for the post-graduate students, researchers, physiologist and biotechnologist to sustain the plant growth and development.
Molecular Structure and Biological Activity of Steroids
by Martin BohlMolecular Structure and Biological Activity of Steroids focuses on the indentification of steroid structural features that control particular biological effects. Steroid geometry plays a critical role in steroid activity; therefore, the results of X-ray crystallographic, NMR spectroscopic, and theoretical studies on structure-activity relationships form an integral part of the book. Well-established observations and proposed models are presented, summarizing knowledge of molecular features (e.g., steroid backbone structures, side-chain constitutions, substitution sites, configurations, hydrogen-bonding patterns) that can affect steroid action. The book also provides overviews about recent progress in various frontier fields of steroid research, including such areas as sex steroids, glucocorticoids, aromatase inhibitors, vitamin D metabolites, brassinosteroids, neuromuscular blocking agents, and cardiotonic steroids. Molecular Structure and Biological Activity of Steroids is a "must-have" resource for biochemists, pharmacologists, endocrinologists, biophysicists, and others actively involved in steroid research.
Molecular Structures and Structural Dynamics of Prion Proteins and Prions
by Jiapu ZhangThis monograph is the first easy-to-read-and-understand book on prion proteins' molecular dynamics (MD) simulations and on prions' molecular modelling (MM) constructions. It enables researchers to see what is crucial to the conformational change from normal cellular prion protein (PrPC) to diseased infectious prions (PrPSc), using MD and MM techniques. As we all know, prion diseases, caused by the body's own proteins, are invariably fatal and highly infectious neurodegenerative diseases effecting humans and almost all animals for a major public health concern. Prion contains no nucleic acids and it is a misshapen or conformation-changed protein that acts like an infectious agent; thus prion diseases are called "protein structural conformational" diseases. PrPC is predominant in α-helices but PrPSc are rich in β-sheets in the form as amyloid fibrils; so very amenable to be studied by MD techniques. Through MD, studies on the protein structures and the structural conversion are very important for revealing secrets of prion diseases and for structure-based drug design or discovery. Rabbits, dogs, horses and buffaloes are reported to be the few low susceptibility species to prion diseases; this book's MD studies on these species are clearly helpful to understand the mechanism underlying the resistance to prion diseases. PrP(1-120) usually has no clear molecular structures; this book also studies this unstructured region through MD and especially MM techniques from the global optimization point of view. This book is ideal for practitioners in computing of biophysics, biochemistry, biomedicine, bioinformatics, cheminformatics, materials science and engineering, applied mathematics and theoretical physics, information technology, operations research, biostatistics, etc. As an accessible introduction to these fields, this book is also ideal as a teaching material for students.